Yanina Panzera1*, Nicolas Sarute1, Lucia Carrau1, Jaime Aldaz2, Ruben Perez1
...presence of four genetic lineages in South America, being the continent with more lineages described to date, underscoring the high genetic diversity of the circulating strains....
Gerald Misinzo1,*, Tebogo Kgotlele1, Epaphras A. Muse1, Jan Van Doorsselaere2, Mikael Berg3, and Muhammad Munir4
...een classified into four lineages. Serological investigations in Tanzania indicate that peste des petits ruminants (PPR) was introduced in 2004 in Ngorongoro district bordering Ken- ya before official confirmation of the disease in most districts of Northern Tanzania in 2008. In 2011, the presence of PPRV in goats of southern Tanzania district of Tandahimba bordering Mozambique was reported. The aim of this study was to perform molecular typing of PPRV strains...
Temitope Oluwasegun Cephas Faleye1, Johnson Adekunle Adeniji1, 2 *
...on of some of the cVDPV2 lineages described in Nigeria between 2005 and 2011 originated from NPEV-Cs circulating in Northern Nigeria. Here, we further investigate whether NPEV-Cs circulating in south-western Nigeria (SWN) contributed to the emergence of these lineages. In 2013 sewage contaminated water samples were collected from two sites in Lagos, Nigeria. Samples were concentrated and inoculated into MCF-7 and RD cell lin...
Moustafa Kardjadj
...T2 and other exotic FMDV lineages in Libya and Egypt demonstrated the need for a robust surveillance system to detect and respond effectively to exotic infections. Emergence and re-emergence of FMD virus genotypes/lineages has been detected necessitating frequent replacement of the vaccine strains. The present review summarizes the knowledge generated in epidemiology, diagnosis and surveillance of the disease in the M...
Saba Rafique1,2,*, Khalid Naeem1, Naila Siddique1, Muhammad Athar Abbas1, Aamer Ali Shah2, Akbar Ali1, Abdul Rahim1 and Farooq Rashid1
...t related to rest of IBV lineages compared in this study. It is concluded that Pak-786 isolate belongs to GI-13 lineage that include both the vaccine and virulent field strains, previously assigned to the 793B like. The study supports the concept that due to mass usage of live IBV vaccinal strains of diverse origin, variety of variants originate through random spontaneous mutation and genetic recombination which could lead to genetic drift. The emergent strain...
Ai Guo1,2,3, Jiaguang Xiao4, Binbin Shan4, Tianxiang Gao5 and Yongdong Zhou3,*
...chondrial genomes of two lineages in Coilia mystus were compared. They were all typical circular double stranded DNA molecule with 17075 bp in C. mystus N and 16964 bp in C. mystus S, respectively, containing the standard metazoan set of 22 transfer RNA genes, 2 ribosomal RNA genes, 13 protein-coding genes and non-coding regions. The mitogenomes of C. mystus N and C. mystus S shared the identical structural organization and g...
Yuan Li1, Liyan Zhang2, Karhoe Loh3, Ji Feng1, Xinqing Zheng1, Puqing Song1 and Longshan Lin1,*
... and two major haplotype lineages were detected that were differentiated approximately 0.3 million years ago. These two haplotype lineages differed significantly in frequency distribution of Chinese and Malaysian populations, showing an imperfect geographical pedigree structure. Results of AMOVA also showed that the genetic differentiation was mainly among populations. According to the distribution of the haplotypes, an ance...
Waqas Ali* and Mudasser Habib
... likelihood) showed that lineages Pan Asia II, An Iran-05, and Group VII within serotype O, A and Asia 1 are causing majority of the outbreaks in the Pakistan during recent years. Moreover, only one residue of VP1 region was under positive selection pressure for serotype A (position 141) located in known critical antigenic region but as a whole protein was under negative selection pressure for serotype O, A and Asia 1. Therefore, under mass vaccination campaig...
Faiz Muhammad1,2, Canfeng Dou1, Zhen-ming Lü1,*, Li Gong1, Xun Du1 and Muhammad Shafi3
... analysis revealed three lineages. The Dongshan population distinctly has shown separate lineage. The haplotype networking has shown that Hap1 contributed 48.051% and appeared in six populations whereas, Hap6, Hap11, Hap 16 and Hap17 were also shared by some populations, rest of the haplotypes were unique. This study solely provide species specific information on its genetic structure and population variability in Chinese waters.
... 
Mubashir Ahmad Khan*, Nazakat Nawaz, Muhammad Arshad, Muhammad Ayub Khan, Tahira, Doulat Baig, Ihsan Ullah Khan and Shamim ul Sibtain Shah
...sesame genotypes in to 6 lineages and 29 clusters. Cluster 25 had the maximum number of genotypes i.e. 18 followed by Cluster 23 (14 genotypes), 19 (12 genotypes) and 9 (9 genotypes). There was a wide range of genetic diversity in this set of sesame germplasm which could be utilized for crop improvement. It is further recommended that for making improvement in sesame crop, identified superior sesame lines viz. SG-115, SG-103, SG-78, SG-79, SG-31, SG-117, SG-10...
Zhaochao Deng1, Na Song2, Yongzhen Li3, Tianxiang Gao1 and Zhiqiang Han1,*
...he NJ tree, two distinct lineages were detected, with strong frequency differences in the geographical distribution. Both lineages were found in Xisha and Zhongsha archipelagos, but only one lineage (lineage B) was detected in Nansha archipelago. Contrary to homogenization expectation, AMOVA and pairwise FST values showed that the genetic differences among three archipelagos were all significant. The patter...
Jingchen Chen, Zhaochao Deng and Zhiqiang Han*
...samples belonging to two lineages of A. personatus mitochondrial DNA (mtDNA) were used in the study. Based on the complete mtDNA sequence, the genetic distance between the two lineages is 0.064. Results show that the total sequence lengths of the three samples of A. personatus mitochondrial genome are 16,537 bp (AP1), 16,536 bp (AP2) and 16,537 bp (AP3), where the base composition has biases of high A+T and low...
Yanyan Yu1,2,3, Yizhong Hu1, Qipeng Zhang1, Rongquan Zheng1,4,*, Bing Shen1, Shenshen Kong1 and Ke Li1
...the calls from different lineages. In this work, we used a single-stimulus design to analyse phonotactic response to stimulus and subsequently estimated the values of female preference functions for call duration and call rate, and recorded and analysed the properties of 756 advertisement calls from 40 males at five reproductive stages and conducted single-stimulus phonotaxis experiments to estimate female preference for different acoustic parameters. Our stud...
Khan Sher1*, Muhammad Subhan1, Muhammad Nisar2, Ali Hazrat2, Zahid Fazal1, Gul Rahim2, Imran Ahmad1, Riaz ul Haq1 and Shamia Bibi1
Genetic Diversity in Common Beans (Phaseolus vulgarus L.) Collected from Different Ecological Zones of Malakand Division (A Part of the Sino Japanese Region of Pakistan)
...tributed 55 lines into 2 lineages (I and II). The former was comprised of 24% bean landraces, while the latter was comprised of 76% landraces. In correlation coefficients 45 combinations were identified having strong positive correlation. The strongest correlations (above 50%) were computed 67% of all the combinations. The principal component analysis (PCA) identified quantitative variability of 55 common bean landraces. The eigenvalues of more than 60.8% acco...
Muhammad Umer Khan1,2*, Muhammad Farooq Sabar1, Atif Amin Baig3, Arif-un-Nisa Naqvi4 and Muhammad Usman Ghani1
...minance of West Eurasian lineages in the Shin population (59.49%), followed by South Asian lineages (25.32%) and then East and Southeast Asian lineages (15.19%). Shin population presented a high genetic diversity of 0.9996 and a low random match probability of 0.0129. To the best of our knowledge, this is the first report of mtDNA profiles of the Shin population, providing a complementing ...
Javed Khan1, Abdul Majid1, Mohammad Nisar2*, Ali Hazrat2, Nausheen Nazir3, Muhammad Zahoor3, Mohammad Ihsan2, Azhar Hussain Shah1, Muhamad Ajmal Khan4 and Muhammad Yahya1
...re divided into two main lineages; lineage A which is further divided into 3 clusters (C1, C2, and C3), and lineage B, further divided into 2 clusters (C4 and C5). The principal component analysis estimated the total variations in the range of 51.43 to 100% with an Eigenvalue of 0.25. It was concluded from the results that Alnus nitida L. genotypes available in Pakistan have come from a narrow gene pool and such types of variations can be exploited to develop ...
Riffat Sultana1*, Samiullah Soomro1 and Chuan Ma2
...1914 respectively. Their lineages indicating negligible genetic divergence and very close resemblance with 99.85% identity between C. (Chrotogonus) h. homalodemus (SWF and LWF) against RID-MMV2XTNY114 and 99.85% identity between C. (Chrotogonus) t. robertsi (SWF and LWF) against RID-MMVW0MTF114. Finally, we discuss the possible taxonomic implication of our DNA sequencing results and point out future research directions....
Gawhara Ahmed-Abdelmonem1*, Zeinab Aboezz2, Ahmed Habashi1, Saad Sharawi2
...duction of new topotypes/lineages of the existing FMD viruses represents a constant risk for cattle production. Serotype A is one of FMDV that is already existing and incriminated lastly in serval problems in cattle population. So, this study aimed at molecular characterization of serotype A FMDV that has been involved in the latest FMD outbreaks in Egypt. Thirty-six samples (26 blood and 10 oral epithelial tissue samples) were obtained from suspected cattle i...
Muhammad Salman Ikram1, Tahir Mehmood1,2*, Sehrish Firyal3, Huma Sattar4, Shagufta Saeed3, Fareeha Nadeem3 and Muhammad Imran Mahmood Khan5
...lation, role of paternal lineages identification which helps to determine the mutation rate of Y-STR and its relationship with paternal lineages determination. When familial searching is coupled with genealogy inquiry, the review article will help us comprehend the combined use of Y-chromosome information and family information and understand the cases on the basis of specific forensic instances....
Amthal Ahmed Fouad1, Basem Mohamed Ahmed2, Momtaz Abdelhady Shahein1, Hussein Aly Hussein2*
...AF4 lineage into two sub-lineages (AF4a and AF4b). Divergence from SAD B19 vaccine strain sequence was also reported but the exact effect of the observed genetic changes in an infectious RABV particle dictates in-vivo studies. ...
Nasir Ali1,2,6, Muhammad Ilyas2,3, Nazia Akbar1,2*, Gohar Rahman2, Shakirullah Khan4, Mujaddad Ur Rehman6, Abdul Samad5, Habib Ahmad1,2 and Bibi Nazia Murtaza7*
...dings regarding maternal lineages of the people of Khyber Pakhtunkhwa, presumed in mtDNA, has their origin from the West Eurasian and South Asian stocks. These results we have offer a reference to better understand the biological linkage of ancient and modern inhabitants living in Khyber Pakhtunkhwa, Pakistan....
Zeynep Karapinar1* and Mehmet Özkan Timurkan2
Shahid Iqbal1, Arshad Khan, Ali Hazrat1*, Gul Rahim, Mohammad Ihsan1, Umar Zad Gul1, Maryam Bibi1, Khadija Bibi1 and Muhammad Mukhtiar2
...were divided into 2 main lineages and further subdivided into 6 clusters where the genotypes A1 and A9 were found the most diverse and were found at the extreme of the Dendrogram. For total seed, storage proteins all the genotypes were subjected to SDS-PAGE analysis using 12.5% acrylamide gel, where a total of 14 polymorphic bands were observed. In Band 1 the highest degree of variation (0.83%), followed by Band 2 and Band 3 with a value of 0.75% variation, wh...
Abdel Satar Arafa
...variability in different lineages.
...
Nahed Yehia1*, Rania I. Mohamed2
...1/97-B like Eurasian sub-lineages (EGY-2 group) that had circulated in Egypt since 2014 and they were clustered with the 2021-2022 strains in the Egy-2b subgroup. Compared with Quail/Hong Kong/G1/97, the strains in this research had a specific characteristic mutation at L87I in A-chicken-Egypt-RN1-2022 and A-chicken- Egypt-RN9-2022, D405N in A-chicken- Egypt-RN5-2022, A-chicken-Egypt-RN6-2022, A-chicken-Egypt-RN9-2022. Also, new characteristic mutations in ant...
Khaled A. El-Dougdoug1, Wael S. El-Araby2* and Rehab A. Dawoud3
...s of various plant virus lineages all the way back to the first genetic mobile components. We investigate the role of horizontal viral transfer from invertebrates to plants during terrestrialization, which was enabled by strong ecological linkages. The intimate evolution of invertebrates and plants permitted these relationships. We hope that plant biologists and virologists will be interested in the evolving big picture of the plant virome’s origins and ...
