Genetic Analysis of African Swine Fever Virus Originating from Pork Products in Indonesia
Seruni Agistiana1, I. Wayan Teguh Wibawan2, Ni Luh Putu Ika Mayasari2, Harimurti Nuradji3, Surachmi Setiyaningsih2*
1Doctorate Student of Medical Microbiology, Animal Biomedicine Program, School of Veterinary Medicine and Biomedical Sciences, IPB University, Bogor, West Jawa, Indonesia; 2Medical Microbiology Division, School of Veterinary Medicine and Biomedical Sciences, IPB University, Bogor, West Jawa, Indonesia; 3Research Centre for Veterinary Science, Research Organization for Health, National Research and Innovation Agency, KST Dr. (H.C.) Ir. H. Soekarno, Jl. Raya Jakarta-Bogor Km. 46 , Bogor, West Java, Indonesia.
*Correspondence | Surachmi Setiyaningsih, Medical Microbiology Division, School of Veterinary Medicine and Biomedical Sciences, IPB University, Bogor, Jawa Barat, Indonesia; Email: surachmi@apps.ipb.ac.id
Figure 1:
Pie chart showing the results of the PCR test for ASFV detection for the total samples in this study (n=38) and by sample type.
Figure 2:
The phylogenetic tree of the African swine fever virus is based on the B646L gene (p72) with 250 bp in size. Phylogenetic analysis was performed using the maximum likelihood method, bootstrap value 1000, and Kimura-2 parameter model.The sign and red text indicates samples from this study. GenBank accession numbers and genotype are provided for reference sequences.
Figure 3:
Phylogenetic tree of studied samples and reference isolates from Indonesia collected in 2019-2023 based on the B646L gene (p72) . Phylogenetic analysis was performed using the maximum likelihood method, bootstrap value 1000, and Kimura-2 parameter model.