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Polyhydroxyalkanoates Biopolymer Production by Moderately Halophilic Paracoccus onubensis Strain E3: Extraction, Characterization and Synergistic Activity with Sorafenib Drug against Hepatocellular Carcinoma through Molecular Docking Approach

Polyhydroxyalkanoates Biopolymer Production by Moderately Halophilic Paracoccus onubensis Strain E3: Extraction, Characterization and Synergistic Activity with Sorafenib Drug against Hepatocellular Carcinoma through Molecular Docking Approach

Hend A. Hamedo, Ahmed E.M. Shokr, Omnia T. Abd-Elsalam and Naglaa Elshafey*

Botany and Microbiology Department, Faculty of Science, Arish University, Al-Arish 45511, Egypt.

 
*Correspondence | Naglaa Elshafey, Botany and Microbiology Department, Faculty of Science, Arish University, Al-Arish 45511, Egypt; Email: [email protected] 

Figure 1:

Phylogenetic relationships of bacterial 16S rRNA gene sequences of Paracoccus onubensis strain E closely related to sequences of several strain retrieved from the GenBank database (Similarity > 90%).

Figure 2:

Scanning electron microscope (SEM) of Paracoccus onubensis strain E3.

Figure 3:

The Factors affecting polyhydroxyalkanoates (PHAs) production (a): Incubation period, (b): pH value, at constant carbon and nitrogen source on growth rate and polyhydroxyalkanoates (PHAs) production by Paracoccus onubensis strain E. on the same line the values set by one-self letter(s) were not significantly different. Error bars represent the standard deviation (±SD).

Figure 4:

(a): Extracted polyhydroxyalkanoates (PHAs), (b): Fourier Transform Infrared (FTIR) spectrum of polyhydroxyalkanoates (PHAs) extracted from moderate halophilic Paracoccus onubensis strain E3.

Figure 6:

Molecular docking interactions between predicted compounds from the synergistic combination between the most potent polyhydroxyalkanoates (PHAs) ingredinents and sorafenib drug against hepatocellular carcinoma (HCC) protien. (A): Predicted compound from 9,12-Octadecadienoic acid (z,z) methyl ester and sorafenib druginteraction, (B): Predicted compound from Isopropyl linoleate and sorafenib drug interaction, (C): Predicted compound between Spathulenol and sorafenib drug interaction. (D): Predicted compound between Triacetin and sorafenib drug interaction.

Figure 5:

Interaction of polyhydroxyalkanoates (PHAs) compounds in active site with (1 S ,3 S)-3-Amino-4-(hexafluoropropan-2-ylidenyl)-cyclopentane-1-carboxylic acid (BCF3).

Pakistan Journal of Zoology

November

Pakistan J. Zool., Vol. 56

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